Database
BC-TFdb Transcription factors drivers in Breast Cancer Database
id |
TP53 |
VariantID |
Class |
ConseqType |
AA |
AAcoord |
sift_sort |
SIFT |
polyphen_sort |
polyphen_class |
PolyPhen |
cadd_sort |
cadd_class |
CADD |
29841 |
SMAD4 |
rs370176106 |
SNP |
missense variant |
P/L |
295 |
461 |
0.46 |
133 |
benign |
0.132 |
20001 |
likely benign |
20 |
29842 |
SMAD4 |
rs1417632301 |
SNP |
missense variant |
P/H |
296 |
501 |
0.5 |
4 |
benign |
0.003 |
23001 |
likely benign |
23 |
29843 |
SMAD4 |
rs1417632301 |
SNP |
missense variant |
P/L |
296 |
301 |
0.3 |
155 |
benign |
0.154 |
22001 |
likely benign |
22 |
29844 |
SMAD4 |
rs1060500737 |
SNP |
missense variant |
H/R |
297 |
11 |
0.01 |
984 |
probably damaging |
0.983 |
22001 |
likely benign |
22 |
29845 |
SMAD4 |
rs1330888967 |
SNP |
missense variant |
G/R |
299 |
81 |
0.08 |
788 |
possibly damaging |
0.787 |
23001 |
likely benign |
23 |
29846 |
SMAD4 |
rs963931106 |
SNP |
missense variant |
H/D |
300 |
11 |
0.01 |
984 |
probably damaging |
0.983 |
22001 |
likely benign |
22 |
29847 |
SMAD4 |
rs1060500731 |
SNP |
missense variant |
H/R |
300 |
11 |
0.01 |
984 |
probably damaging |
0.983 |
22001 |
likely benign |
22 |
29848 |
SMAD4 |
rs1555685979 |
SNP |
missense variant |
W/R |
302 |
1 |
0 |
813 |
possibly damaging |
0.812 |
32001 |
likely deleterious |
32 |
29849 |
SMAD4 |
rs1568206575 |
SNP |
missense variant |
P/A |
303 |
131 |
0.13 |
103 |
benign |
0.102 |
21001 |
likely benign |
21 |
29850 |
SMAD4 |
rs375185293 |
SNP |
missense variant |
V/I |
304 |
291 |
0.29 |
977 |
probably damaging |
0.976 |
22001 |
likely benign |
22 |